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    BIOINFORMATICS
    2006
    101views more  BIOINFORMATICS 2006»
    An application for assessing quality of RNA hybridized to Affymetrix GeneChips
    13 years 4 months ago
    An application for assessing quality of RNA hybridized to Affymetrix GeneChips
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    ll Text][Abstract] , April 1, 2006; 7 (2): 198-212.Biostat. K. J. Archer, C. I. Dumur, S. E. Joel and V. Ramakrishnan mixed-effects models Assessing quality of hybridized RNA in Af...
    Kellie J. Archer, Tobias Guennel
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    BMCBI
    2006
    112views more  BMCBI 2006»
    Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data
    13 years 4 months ago
    Assessment of the relationship between pre-chip and post-chip quality measures for Affymetrix GeneChip expression data
    Download  www.biomedcentral.com
    Background: Gene expression microarray experiments are expensive to conduct and guidelines for acceptable quality control at intermediate steps before and after the samples are hy...
    Lesley Jones, Darlene R. Goldstein, Gareth P. Hugh...
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    BMCBI
    2010
    108views more  BMCBI 2010»
    Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
    12 years 11 months ago
    Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
    Download  www.biomedcentral.com
    Background: Concomitant with the rise in the popularity of DNA microarrays has been a surge of proposed methods for the analysis of microarray data. Fully controlled "spike-i...
    Qianqian Zhu, Jeffrey C. Miecznikowski, Marc S. Ha...
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    BMCBI
    2006
    155views more  BMCBI 2006»
    A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates
    13 years 4 months ago
    A powerful method for detecting differentially expressed genes from GeneChip arrays that does not require replicates
    Download  www.biomedcentral.com
    Background: Studies of differential expression that use Affymetrix GeneChip arrays are often carried out with a limited number of replicates. Reasons for this include financial co...
    Anne-Mette K. Hein, Sylvia Richardson
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    BMCBI
    2006
    171views more  BMCBI 2006»
    The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies
    13 years 4 months ago
    The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies
    Download  www.biomedcentral.com
    Background: Intensity values measured by Affymetrix microarrays have to be both normalized, to be able to compare different microarrays by removing non-biological variation, and s...
    Roel G. W. Verhaak, Frank J. T. Staal, Peter J. M....
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