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» An error model for protein quantification
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BMCBI
2006
130views more  BMCBI 2006»
13 years 5 months ago
4SALE - A tool for synchronous RNA sequence and secondary structure alignment and editing
Background: In sequence analysis the multiple alignment builds the fundament of all proceeding analyses. Errors in an alignment could strongly influence all succeeding analyses an...
Philipp N. Seibel, Tobias Müller, Thomas Dand...
COMPGEOM
2004
ACM
13 years 10 months ago
Low-dimensional embedding with extra information
A frequently arising problem in computational geometry is when a physical structure, such as an ad-hoc wireless sensor network or a protein backbone, can measure local information...
Mihai Badoiu, Erik D. Demaine, Mohammad Taghi Haji...
BMCBI
2010
202views more  BMCBI 2010»
13 years 5 months ago
NeMo: Network Module identification in Cytoscape
Background: As the size of the known human interactome grows, biologists increasingly rely on computational tools to identify patterns that represent protein complexes and pathway...
Corban G. Rivera, Rachit Vakil, Joel S. Bader
BMCBI
2006
137views more  BMCBI 2006»
13 years 5 months ago
Bounded search for de novo identification of degenerate cis-regulatory elements
Background: The identification of statistically overrepresented sequences in the upstream regions of coregulated genes should theoretically permit the identification of potential ...
Jonathan M. Carlson, Arijit Chakravarty, Radhika S...
NAR
2011
225views Computer Vision» more  NAR 2011»
12 years 8 months ago
Gramene database in 2010: updates and extensions
Now in its 10th year, the Gramene database (http:// www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for maj...
Ken Youens-Clark, Edward S. Buckler, Terry M. Cass...