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BMCBI
2007
146views more  BMCBI 2007»
13 years 5 months ago
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
Background: Transcriptional modules (TM) consist of groups of co-regulated genes and transcription factors (TF) regulating their expression. Two high-throughput (HT) experimental ...
Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan,...
BIOSURVEILLANCE
2007
Springer
13 years 12 months ago
Global Foot-and-Mouth Disease Surveillance Using BioPortal
Abstract. The paper presents a description of the FMD BioPortal biosurveillance system (http://fmd.ucdavis.edu/bioportal/) that is currently operating to capture, analyze, and diss...
Mark Thurmond, Andrés Perez, Chunju Tseng, ...
ICASSP
2011
IEEE
12 years 9 months ago
Uncover cooperative gene regulations by microRNAs and transcription factors in glioblastoma using a nonnegative hybrid factor mo
—Transcriptional regulation by transcription factors (TFs) and microRNAs controls when and how much RNA is created. Due to technical limitations, the protein level expressions of...
Jia Meng, Hung-I Harry Chen, Jianqiu Zhang, Yidong...
ICDIM
2010
IEEE
13 years 3 months ago
Data mining and automatic OLAP schema generation
Data mining aims at extraction of previously unidentified information from large databases. It can be viewed as an automated application of algorithms to discover hidden patterns a...
Muhammad Usman, Sohail Asghar, Simon Fong
BMCBI
2010
240views more  BMCBI 2010»
13 years 5 months ago
TAM: A method for enrichment and depletion analysis of a microRNA category in a list of microRNAs
Background: MicroRNAs (miRNAs) are a class of important gene regulators. The number of identified miRNAs has been increasing dramatically in recent years. An emerging major challe...
Ming Lu, Bing Shi, Juan Wang, Qun Cao, Qinghua Cui