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» Analysis of Protein Protein Dimeric Interfaces
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BIBM
2007
IEEE
130views Bioinformatics» more  BIBM 2007»
13 years 11 months ago
Analysis of Protein Protein Dimeric Interfaces
We analyzed the structural properties and the local surface environment of surface amino acid residues of proteins using a large, non-redundant dataset of 2383 protein chains in d...
Feihong Wu, Fadi Towfic, Drena Dobbs, Vasant Honav...
NAR
2011
191views Computer Vision» more  NAR 2011»
12 years 7 months ago
The protein common interface database (ProtCID) - a comprehensive database of interactions of homologous proteins in multiple cr
The protein common interface database (ProtCID) is a database that contains clusters of similar homodimeric and heterodimeric interfaces observed in multiple crystal forms (CFs). ...
Qifang Xu, Roland L. Dunbrack Jr.
BMCBI
2010
80views more  BMCBI 2010»
13 years 4 months ago
Sampling the conformation of protein surface residues for flexible protein docking
Background: The problem of determining the physical conformation of a protein dimer, given the structures of the two interacting proteins in their unbound state, is a difficult on...
Patricia Francis-Lyon, Shengyin Gu, Joel Hass, Nin...
BMCBI
2006
120views more  BMCBI 2006»
13 years 4 months ago
SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces
Background: Currently there is a strong need for methods that help to obtain an accurate description of protein interfaces in order to be able to understand the principles that go...
Joan Teyra, Andreas Doms, Michael Schroeder, M. Te...
BMCBI
2004
101views more  BMCBI 2004»
13 years 4 months ago
A database for G proteins and their interaction with GPCRs
Background: G protein-coupled receptors (GPCRs) transduce signals from extracellular space into the cell, through their interaction with G proteins, which act as switches forming ...
Antigoni L. Elefsinioti, Pantelis G. Bagos, Ioanni...