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» Analysis of Secondary Structure Elements of Proteins Using I...
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PODS
2009
ACM
130views Database» more  PODS 2009»
14 years 6 months ago
Secondary indexing in one dimension: beyond b-trees and bitmap indexes
Let be a finite, ordered alphabet, and consider a string x = x1x2 . . . xn n . A secondary index for x answers alphabet range queries of the form: Given a range [al, ar] , retu...
Rasmus Pagh, Srinivasa Rao Satti
BMCBI
2008
102views more  BMCBI 2008»
13 years 5 months ago
Combining sequence-based prediction methods and circular dichroism and infrared spectroscopic data to improve protein secondary
Background: A number of sequence-based methods exist for protein secondary structure prediction. Protein secondary structures can also be determined experimentally from circular d...
Jonathan G. Lees, Robert W. Janes
BMCBI
2010
205views more  BMCBI 2010»
13 years 5 months ago
A fast indexing approach for protein structure comparison
Background: Protein structure comparison is a fundamental task in structural biology. While the number of known protein structures has grown rapidly over the last decade, searchin...
Lei Zhang, James Bailey, Arun Siddharth Konagurthu...
BMCBI
2006
150views more  BMCBI 2006»
13 years 5 months ago
Protein structure similarity from principle component correlation analysis
Background: Owing to rapid expansion of protein structure databases in recent years, methods of structure comparison are becoming increasingly effective and important in revealing...
Xiaobo Zhou, James Chou, Stephen T. C. Wong
BMCBI
2008
103views more  BMCBI 2008»
13 years 5 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik