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» Analysis of oligonucleotide array experiments with repeated ...
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RECOMB
2002
Springer
14 years 3 months ago
A bayesian approach to transcript estimation from gene array data: the BEAM technique
We present a new statistically optimal approach to estimate transcript levels and ratios from one or more gene array experiments. The Bayesian Estimation of Array Measurements (BE...
Ron O. Dror, Jonathan G. Murnick, Nicola A. Rinald...
BMCBI
2008
123views more  BMCBI 2008»
13 years 3 months ago
Statistical methodology for the analysis of dye-switch microarray experiments
Background: In individually dye-balanced microarray designs, each biological sample is hybridized on two different slides, once with Cy3 and once with Cy5. While this strategy ens...
Tristan Mary-Huard, Julie Aubert, Nadera Mansouri-...
BMCBI
2006
99views more  BMCBI 2006»
13 years 3 months ago
A proposed metric for assessing the measurement quality of individual microarrays
Background: High-density microarray technology is increasingly applied to study gene expression levels on a large scale. Microarray experiments rely on several critical steps that...
Kyoungmi Kim, Grier P. Page, T. Mark Beasley, Step...
ICSE
1999
IEEE-ACM
13 years 7 months ago
Experience with Performing Architecture Tradeoff Analysis
Software architectures, like complex designs in any field, embody tradeoffs made by the designers. However, these tradeoffs are not always made explicitly by the designers and the...
Rick Kazman, Mario Barbacci, Mark Klein, S. Jeromy...
BMCBI
2005
121views more  BMCBI 2005»
13 years 3 months ago
Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data
Background: A critical step in processing oligonucleotide microarray data is combining the information in multiple probes to produce a single number that best captures the express...
Kerby Shedden, Wei Chen, Rork Kuick, Debashis Ghos...