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BMCBI
2011
12 years 12 months ago
Context-dependent transcriptional regulations between signal transduction pathways
Background: Cells coordinate their metabolism, proliferation, and cellular communication according to environmental cues through signal transduction. Because signal transduction h...
Sohyun Hwang, Sangwoo Kim, Heesung Shin, Doheon Le...
BMCBI
2007
136views more  BMCBI 2007»
13 years 5 months ago
Reduced modeling of signal transduction - a modular approach
Background: Combinatorial complexity is a challenging problem in detailed and mechanistic mathematical modeling of signal transduction. This subject has been discussed intensively...
Markus Koschorreck, Holger Conzelmann, Sybille Ebe...
EMSOFT
2005
Springer
13 years 10 months ago
A structural approach to quasi-static schedulability analysis of communicating concurrent programs
We describe a system as a set of communicating concurrent programs. Quasi-static scheduling compiles the concurrent programs into a sequential one. It uses a Petri net as an inter...
Cong Liu, Alex Kondratyev, Yosinori Watanabe, Albe...
FM
2009
Springer
138views Formal Methods» more  FM 2009»
13 years 11 months ago
What Can Formal Methods Bring to Systems Biology?
This position paper argues that the operational modelling approaches from the formal methods community can be applied fruitfully within the systems biology domain. The results can ...
Nicola Bonzanni, K. Anton Feenstra, Wan Fokkink, E...
ICSE
1995
IEEE-ACM
13 years 8 months ago
A Compact Petri Net Representation for Concurrent Programs
This paper presents a compact Petri net representation that is e cient to construct for concurrent programs that use explicit tasking and rendezvous style communication. These Pet...
Matthew B. Dwyer, Lori A. Clarke, Kari A. Nies