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» Approximate Similarity Search in Genomic Sequence Databases ...
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BMCBI
2008
122views more  BMCBI 2008»
13 years 6 months ago
ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins
Background: The expansion of raw protein sequence databases in the post genomic era and availability of fresh annotated sequences for major localizations particularly motivated us...
Aarti Garg, Gajendra P. S. Raghava
SIGMOD
2004
ACM
188views Database» more  SIGMOD 2004»
14 years 6 months ago
Online Event-driven Subsequence Matching over Financial Data Streams
Subsequence similarity matching in time series databases is an important research area for many applications. This paper presents a new approximate approach for automatic online s...
Huanmei Wu, Betty Salzberg, Donghui Zhang
CVPR
2007
IEEE
14 years 8 months ago
Pyramid Match Hashing: Sub-Linear Time Indexing Over Partial Correspondences
Matching local features across images is often useful when comparing or recognizing objects or scenes, and efficient techniques for obtaining image-to-image correspondences have b...
Kristen Grauman, Trevor Darrell
ICASSP
2009
IEEE
14 years 23 days ago
DNA coding using finite-context models and arithmetic coding
The interest in DNA coding has been growing with the availability of extensive genomic databases. Although only two bits are sufficient to encode the four DNA bases, efficient l...
Armando J. Pinho, António J. R. Neves, Carl...
FCCM
2009
IEEE
169views VLSI» more  FCCM 2009»
14 years 23 days ago
RC-BLASTn: Implementation and Evaluation of the BLASTn Scan Function
BLASTn is a tool universally used by biologists to identify similarities between nucleotide based biological genome sequences. This report describes an FPGA based hardware impleme...
Siddhartha Datta, Parag Beeraka, Ron Sass