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JMLR
2010
150views more  JMLR 2010»
12 years 11 months ago
Approximate parameter inference in a stochastic reaction-diffusion model
We present an approximate inference approach to parameter estimation in a spatio-temporal stochastic process of the reaction-diffusion type. The continuous space limit of an infer...
Andreas Ruttor, Manfred Opper
JCB
2006
185views more  JCB 2006»
13 years 4 months ago
Bayesian Sequential Inference for Stochastic Kinetic Biochemical Network Models
As postgenomic biology becomes more predictive, the ability to infer rate parameters of genetic and biochemical networks will become increasingly important. In this paper, we expl...
Andrew Golightly, Darren J. Wilkinson
SAC
2008
ACM
13 years 3 months ago
Bayesian inference for a discretely observed stochastic kinetic model
The ability to infer parameters of gene regulatory networks is emerging as a key problem in systems biology. The biochemical data are intrinsically stochastic and tend to be observ...
Richard J. Boys, Darren J. Wilkinson, Thomas B. L....
AAAI
2006
13 years 5 months ago
Mixtures of Predictive Linear Gaussian Models for Nonlinear, Stochastic Dynamical Systems
The Predictive Linear Gaussian model (or PLG) improves upon traditional linear dynamical system models by using a predictive representation of state, which makes consistent parame...
David Wingate, Satinder P. Singh
ICASSP
2011
IEEE
12 years 8 months ago
Langevin and hessian with fisher approximation stochastic sampling for parameter estimation of structured covariance
We have studied two efficient sampling methods, Langevin and Hessian adapted Metropolis Hastings (MH), applied to a parameter estimation problem of the mathematical model (Lorent...
Cornelia Vacar, Jean-François Giovannelli, ...