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CPM
1997
Springer
111views Combinatorics» more  CPM 1997»
13 years 9 months ago
Approximation Algorithms for the Fixed-Topology Phylogenetic Number Problem
Mary Cryan, Leslie Ann Goldberg, Cynthia A. Philli...
DAM
2007
153views more  DAM 2007»
13 years 5 months ago
Computing the minimum number of hybridization events for a consistent evolutionary history
It is now well-documented that the structure of evolutionary relationships between a set of present-day species is not necessarily tree-like. The reason for this is that reticulat...
Magnus Bordewich, Charles Semple
ISAAC
2009
Springer
147views Algorithms» more  ISAAC 2009»
13 years 12 months ago
Computing a Smallest Multi-labeled Phylogenetic Tree from Rooted Triplets
Abstract. We investigate the computational complexity of a new combinatorial problem of inferring a smallest possible multi-labeled phylogenetic tree (MUL tree) which is consistent...
Sylvain Guillemot, Jesper Jansson, Wing-Kin Sung
TCBB
2010
166views more  TCBB 2010»
13 years 3 months ago
Approximate Maximum Parsimony and Ancestral Maximum Likelihood
— We explore the maximum parsimony (MP) and ancestral maximum likelihood (AML) criteria in phylogenetic tree reconstruction. Both problems are NP hard, so we seek approximate sol...
Noga Alon, Benny Chor, Fabio Pardi, Anat Rapoport
ICCS
2001
Springer
13 years 10 months ago
High-Performance Algorithm Engineering for Computational Phylogenetics
Abstract. Phylogeny reconstruction from molecular data poses complex optimization problems: almost all optimization models are NP-hard and thus computationally intractable. Yet app...
Bernard M. E. Moret, David A. Bader, Tandy Warnow