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» Arc-preserving subsequences of arc-annotated sequences
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WG
2010
Springer
13 years 3 months ago
Parameterized Complexity of the Arc-Preserving Subsequence Problem
Abstract. We study the Arc-Preserving Subsequence (APS) problem with unlimited annotations. Given two arc-annotated sequences P and T, this problem asks if it is possible to delete...
Dániel Marx, Ildikó Schlotter
ICCS
2005
Springer
13 years 10 months ago
What Makes the Arc-Preserving Subsequence Problem Hard?
Abstract. Given two arc-annotated sequences (S, P) and (T, Q) representing RNA structures, the Arc-Preserving Subsequence (APS) problem asks whether (T, Q) can be obtained from (S,...
Guillaume Blin, Guillaume Fertin, Romeo Rizzi, St&...
IPL
2006
67views more  IPL 2006»
13 years 4 months ago
A remark on the subsequence problem for arc-annotated sequences with pairwise nested arcs
The Arc-Preserving Subsequence (APS) problem appears in the comparison of RNA structures in computational biology. Given two arcannotated sequences of length n and m < n, APS a...
Peter Damaschke