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» Assembling genomes on large-scale parallel computers
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BMCBI
2008
220views more  BMCBI 2008»
13 years 4 months ago
Gene prediction in metagenomic fragments: A large scale machine learning approach
Background: Metagenomics is an approach to the characterization of microbial genomes via the direct isolation of genomic sequences from the environment without prior cultivation. ...
Katharina J. Hoff, Maike Tech, Thomas Lingner, Rol...
WEA
2005
Springer
176views Algorithms» more  WEA 2005»
13 years 10 months ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader
ICPADS
2005
IEEE
13 years 10 months ago
PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction
: Accurate reconstruction of phylogenetic trees very often involves solving hard optimization problems, particularly the maximum parsimony (MP) and maximum likelihood (ML) problems...
Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Cru...
ICCS
2003
Springer
13 years 10 months ago
Parallelisation of Sparse Grids for Large Scale Data Analysis
Sparse Grids are the basis for efficient high dimensional approximation and have recently been applied successfully to predictive modelling. They are spanned by a collection of si...
Jochen Garcke, Markus Hegland, Ole Møller N...
IPPS
2007
IEEE
13 years 11 months ago
Stack Trace Analysis for Large Scale Debugging
We present the Stack Trace Analysis Tool (STAT) to aid in debugging extreme-scale applications. STAT can reduce problem exploration spaces from thousands of processes to a few by ...
Dorian C. Arnold, Dong H. Ahn, Bronis R. de Supins...