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» Assembling genomes on large-scale parallel computers
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IPPS
2009
IEEE
13 years 12 months ago
Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA
Emerging DNA sequencing technologies open up exciting new opportunities for genome sequencing by generating read data with a massive throughput. However, produced reads are signif...
Haixiang Shi, Bertil Schmidt, Weiguo Liu, Wolfgang...
CCGRID
2004
IEEE
13 years 9 months ago
DWDM-RAM: a data intensive Grid service architecture enabled by dynamic optical networks
Next generation applications and architectures (for example, Grids) are driving radical changes in the nature of traffic, service models, technology, and cost, creating opportunit...
Tal Lavian, Joe Mambretti, Doug Cutrell, Howard J....
CLADE
2008
IEEE
13 years 11 months ago
SWARM: a scientific workflow for supporting bayesian approaches to improve metabolic models
With the exponential growth of complete genome sequences, the analysis of these sequences is becoming a powerful approach to build genome-scale metabolic models. These models can ...
Xinghua Shi, Rick Stevens
BMCBI
2011
12 years 8 months ago
SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
Background: The popularity of massively parallel exome and transcriptome sequencing projects demands new data mining tools with a comprehensive set of features to support a wide r...
Xutao Deng