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» Assembly of Large Genomes from Paired Short Reads
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BMCBI
2011
12 years 9 months ago
SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
Background: The popularity of massively parallel exome and transcriptome sequencing projects demands new data mining tools with a comprehensive set of features to support a wide r...
Xutao Deng
BMCBI
2011
12 years 9 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
NAR
2010
115views more  NAR 2010»
13 years 1 days ago
ChimerDB 2.0 - a knowledgebase for fusion genes updated
Chromosome translocations and gene fusions are frequent events in the human genome and have been found to cause diverse types of tumor. ChimerDB is a knowledgebase of fusion genes...
Pora Kim, Suhyeon Yoon, Namshin Kim, Sanghyun Lee,...
SSDBM
2005
IEEE
122views Database» more  SSDBM 2005»
13 years 11 months ago
Detection and Tracking of Discrete Phenomena in Sensor-Network Databases
This paper introduces a framework for Phenomena Detection and Tracking (PDT, for short) in sensor network databases. Examples of detectable phenomena include the propagation over ...
Mohamed H. Ali, Mohamed F. Mokbel, Walid G. Aref, ...
CLADE
2008
IEEE
13 years 11 months ago
SWARM: a scientific workflow for supporting bayesian approaches to improve metabolic models
With the exponential growth of complete genome sequences, the analysis of these sequences is becoming a powerful approach to build genome-scale metabolic models. These models can ...
Xinghua Shi, Rick Stevens