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» Assembly sequencing with toleranced parts
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BMCBI
2011
12 years 9 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
BMCBI
2008
78views more  BMCBI 2008»
13 years 5 months ago
A new protein linear motif benchmark for multiple sequence alignment software
Background: Linear motifs (LMs) are abundant short regulatory sites used for modulating the functions of many eukaryotic proteins. They play important roles in post-translational ...
Emmanuel Perrodou, Claudia Chica, Olivier Poch, To...
TAPIA
2009
ACM
13 years 12 months ago
A platform-based design environment for synthetic biological systems
Genomics has reached the stage at which the amount of DNA sequence information in existing databases is quite large. Synthetic biology is now using these databases to catalog sequ...
Douglas Densmore, Anne Van Devender, Matthew Johns...
SMA
2003
ACM
13 years 10 months ago
Geometric constraint solving via C-tree decomposition
This paper has two parts. First, we propose a method which can be used to decompose a geometric constraint graph into a c-tree. With this decomposition, solving for a well-constrai...
Xiao-Shan Gao, Gui-Fang Zhang
DATE
2010
IEEE
156views Hardware» more  DATE 2010»
13 years 10 months ago
3D-integration of silicon devices: A key technology for sophisticated products
—3D integration is a key solution to the predicted performance increase of future electronic systems. It offers extreme miniaturization and fabrication of More than Moore product...
Armin Klumpp, Peter Ramm, R. Wieland