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» AutoFACT: An Automatic Functional Annotation and Classificat...
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OTM
2010
Springer
13 years 3 months ago
Integrating Keywords and Semantics on Document Annotation and Search
This paper describes GoNTogle, a framework for document annotation and retrieval, built on top of Semantic Web and IR technologies. GoNTogle supports ontology-based annotation for ...
Nikos Bikakis, Giorgos Giannopoulos, Theodore Dala...
BMCBI
2008
141views more  BMCBI 2008»
13 years 5 months ago
The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation
Background: Automated protein function prediction methods are needed to keep pace with high-throughput sequencing. With the existence of many programs and databases for inferring ...
Chenggang Yu, Nela Zavaljevski, Valmik Desai, Seth...
BMCBI
2005
173views more  BMCBI 2005»
13 years 5 months ago
Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis
Background: The large amount of completely sequenced genomes allows genomic context analysis to predict reliable functional associations between prokaryotic proteins. Major method...
François Enault, Karsten Suhre, Jean-Michel...
EMNLP
2006
13 years 6 months ago
Automatic classification of citation function
The automatic recognition of the rhetorical function of citations in scientific text has many applications, from improvement of impact factor calculations to text summarisation an...
Simone Teufel, Advaith Siddharthan, Dan Tidhar
BMCBI
2005
131views more  BMCBI 2005»
13 years 5 months ago
Functional annotation by identification of local surface similarities: a novel tool for structural genomics
Background: Protein function is often dependent on subsets of solvent-exposed residues that may exist in a similar three-dimensional configuration in non homologous proteins thus ...
Fabrizio Ferrè, Gabriele Ausiello, Andreas ...