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BMCBI
2008
144views more  BMCBI 2008»
13 years 5 months ago
Automatically extracting functionally equivalent proteins from SwissProt
Background: There is a frequent need to obtain sets of functionally equivalent homologous proteins (FEPs) from different species. While it is usually the case that orthology impli...
Lisa E. M. McMillan, Andrew C. R. Martin
BMCBI
2005
160views more  BMCBI 2005»
13 years 4 months ago
Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot
Background: In the context of the BioCreative competition, where training data were very sparse, we investigated two complementary tasks: 1) given a Swiss-Prot triplet, containing...
Frédéric Ehrler, Antoine Geissbü...
COOPIS
2004
IEEE
13 years 8 months ago
Automatic Initiation of an Ontology
We report on an a set of experiments carried out in the context of the Flemish OntoBasis project. Our purpose is to extract semantic relations from text corpora in an unsupervised ...
Marie-Laure Reinberger, Peter Spyns, A. Johannes P...
JCDL
2003
ACM
112views Education» more  JCDL 2003»
13 years 10 months ago
Protein Association Discovery in Biomedical Literature
Protein association discovery can directly contribute toward developing protein pathways; hence it is a significant problem in bioinformatics. LUCAS (Library of User-Oriented Conc...
Yueyu Fu, Javed Mostafa, Kazuhiro Seki
BMCBI
2008
184views more  BMCBI 2008»
13 years 5 months ago
Integrating protein-protein interactions and text mining for protein function prediction
Background: Functional annotation of proteins remains a challenging task. Currently the scientific literature serves as the main source for yet uncurated functional annotations, b...
Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich...