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» BayesPeak - an R package for analysing ChIP-seq data
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BIOINFORMATICS
2011
12 years 8 months ago
BayesPeak - an R package for analysing ChIP-seq data
Jonathan M. Cairns, Christiana Spyrou, Rory Stark,...
BIOINFORMATICS
2005
105views more  BIOINFORMATICS 2005»
13 years 4 months ago
MADE4: an R package for multivariate analysis of gene expression data
Summary: MADE4, microarray ade4, is a software package that facilitates multivariate analysis of microarray gene expression data. MADE4 accepts a wide variety of gene expression d...
Aedín C. Culhane, Jean Thioulouse, Guy Perr...
BMCBI
2010
151views more  BMCBI 2010»
13 years 4 months ago
BABAR: an R package to simplify the normalisation of common reference design microarray-based transcriptomic datasets
Background: The development of DNA microarrays has facilitated the generation of hundreds of thousands of transcriptomic datasets. The use of a common reference microarray design ...
Mark J. Alston, John Seers, Jay C. D. Hinton, Sach...
HPDC
2010
IEEE
13 years 5 months ago
Optimization of a parallel permutation testing function for the SPRINT R package
The statistical language R and Bioconductor package are favoured by many biostatisticians for processing microarray data. The amount of data produced by these analyses has reached...
Savvas Petrou, Terence M. Sloan, Muriel Mewissen, ...
BMCBI
2008
160views more  BMCBI 2008»
13 years 4 months ago
Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'
Background: The variety of DNA microarray formats and datasets presently available offers an unprecedented opportunity to perform insightful comparisons of heterogeneous data. Cro...
Alexandre Kuhn, Ruth Luthi-Carter, Mauro Delorenzi