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BMCBI
2006
127views more  BMCBI 2006»
13 years 6 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...
BMCBI
2007
166views more  BMCBI 2007»
13 years 6 months ago
How to decide which are the most pertinent overly-represented features during gene set enrichment analysis
Background: The search for enriched features has become widely used to characterize a set of genes or proteins. A key aspect of this technique is its ability to identify correlati...
Roland Barriot, David J. Sherman, Isabelle Dutour
BMCBI
2007
202views more  BMCBI 2007»
13 years 6 months ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...
BMCBI
2005
144views more  BMCBI 2005»
13 years 6 months ago
Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in
Background: Comparison of data produced on different microarray platforms often shows surprising discordance. It is not clear whether this discrepancy is caused by noisy data or b...
Scott L. Carter, Aron C. Eklund, Brigham H. Mecham...
TPDS
2008
113views more  TPDS 2008»
13 years 6 months ago
Evaluating a High-Level Parallel Language (GpH) for Computational GRIDs
Computational Grids potentially offer low cost, readily available, and large-scale high-performance platforms. For the parallel execution of programs, however, computational GRIDs ...
Abdallah Al Zain, Philip W. Trinder, Greg Michaels...