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JEA
2008
120views more  JEA 2008»
13 years 4 months ago
Better external memory suffix array construction
Suffix arrays are a simple and powerful data structure for text processing that can be used for full text indexes, data compression, and many other applications in particular in b...
Roman Dementiev, Juha Kärkkäinen, Jens M...
SODA
1990
ACM
173views Algorithms» more  SODA 1990»
13 years 5 months ago
Suffix Arrays: A New Method for On-Line String Searches
A new and conceptually simple data structure, called a suffix array, for on-line string searches is introduced in this paper. Constructing and querying suffix arrays is reduced to...
Udi Manber, Gene Myers
ICDE
2004
IEEE
139views Database» more  ICDE 2004»
14 years 5 months ago
Engineering a Fast Online Persistent Suffix Tree Construction
Online persistent suffix tree construction has been considered impractical due to its excessive I/O costs. However, these prior studies have not taken into account the effects of ...
Srikanta J. Bedathur, Jayant R. Haritsa
CIKM
2009
Springer
13 years 8 months ago
Suffix trees for very large genomic sequences
A suffix tree is a fundamental data structure for string searching algorithms. Unfortunately, when it comes to the use of suffix trees in real-life applications, the current metho...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
16
Voted
DCC
2009
IEEE
14 years 5 months ago
Linear Suffix Array Construction by Almost Pure Induced-Sorting
We present a linear time and space suffix array (SA) construction algorithm called the SA-IS algorithm. The SA-IS algorithm is novel because of the LMS-substrings used for the pro...
Ge Nong, Sen Zhang, Wai Hong Chan