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» Biomedical ontology improves biomedical literature clusterin...
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KCAP
2009
ACM
13 years 11 months ago
Biomedical knowledge engineering tools based on experimental design: a case study based on neuroanatomical tract-tracing experim
Curating information from the literature for storage in databases is a crucial task in biological research, and many groups assign a particular person or team to that process. We ...
Gully A. P. C. Burns, Thomas A. Russ
BMCBI
2005
251views more  BMCBI 2005»
13 years 4 months ago
Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation
Background: The ability to distinguish between genes and proteins is essential for understanding biological text. Support Vector Machines (SVMs) have been proven to be very effici...
Tapio Pahikkala, Filip Ginter, Jorma Boberg, Jouni...
BMCBI
2010
186views more  BMCBI 2010»
13 years 5 months ago
Knowledge-based biomedical word sense disambiguation: comparison of approaches
Background: Word sense disambiguation (WSD) algorithms attempt to select the proper sense of ambiguous terms in text. Resources like the UMLS provide a reference thesaurus to be u...
Antonio Jimeno Yepes, Alan R. Aronson
BMCBI
2008
158views more  BMCBI 2008»
13 years 5 months ago
Discovering gene annotations in biomedical text databases
Currently, most of the discovered biological and biomedical knowledge is available as textual data in scientific papers. And, locating and curating information about a genomic enti...
Ali Cakmak, Gultekin Özsoyoglu
SIGIR
2008
ACM
13 years 4 months ago
Improving biomedical document retrieval using domain knowledge
Research articles typically introduce new results or findings and relate them to knowledge entities of immediate relevance. However, a large body of context knowledge related to t...
Shuguang Wang, Milos Hauskrecht