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BMCBI
2010
125views more  BMCBI 2010»
13 years 6 months ago
Large-scale prediction of protein-protein interactions from structures
Background: The prediction of protein-protein interactions is an important step toward the elucidation of protein functions and the understanding of the molecular mechanisms insid...
Martial Hue, Michael Riffle, Jean-Philippe Vert, W...
BMCBI
2005
162views more  BMCBI 2005»
13 years 6 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes
CORR
2010
Springer
163views Education» more  CORR 2010»
13 years 4 months ago
Faster Rates for training Max-Margin Markov Networks
Structured output prediction is an important machine learning problem both in theory and practice, and the max-margin Markov network (M3 N) is an effective approach. All state-of-...
Xinhua Zhang, Ankan Saha, S. V. N. Vishwanathan
CEC
2009
IEEE
13 years 10 months ago
A novel EDAs based method for HP model protein folding
— The protein structure prediction (PSP) problem is one of the most important problems in computational biology. This paper proposes a novel Estimation of Distribution Algorithms...
Benhui Chen, Long Li, Jinglu Hu
ICPR
2008
IEEE
14 years 7 months ago
Fast protein homology and fold detection with sparse spatial sample kernels
In this work we present a new string similarity feature, the sparse spatial sample (SSS). An SSS is a set of short substrings at specific spatial displacements contained in the or...
Pai-Hsi Huang, Pavel P. Kuksa, Vladimir Pavlovic