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BMCBI
2011
13 years 14 days ago
A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
Background: Bioinformatic analyses typically proceed as chains of data-processing tasks. A pipeline, or ‘workflow’, is a well-defined protocol, with a specific structure defin...
Marcin Cieslik, Cameron Mura
CLUSTER
2010
IEEE
12 years 9 months ago
Middleware support for many-task computing
Many-task computing aims to bridge the gap between two computing paradigms, high throughput computing and high performance computing. Many-task computing denotes highperformance co...
Ioan Raicu, Ian T. Foster, Mike Wilde, Zhao Zhang,...
ESCIENCE
2005
IEEE
13 years 11 months ago
Flexible IO Services in the Kepler Grid Workflow System
Existing Grid workflow tools assume that individual components either communicate by passing files from one application to another, or are explicitly linked using interprocess com...
David Abramson, Jagan Kommineni, Ilkay Altintas
CF
2007
ACM
13 years 9 months ago
Parallel genomic sequence-search on a massively parallel system
In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequencesearch algorithms to search these databases contin...
Oystein Thorsen, Brian E. Smith, Carlos P. Sosa, K...
IPPS
2002
IEEE
13 years 10 months ago
MPI/IO on DAFS over VIA: Implementation and Performance Evaluation
In this paper, we describe an implementation of MPI-IO on top of the Direct Access File System (DAFS) standard. The implementation is realized by porting ROMIO on top of DAFS. We ...
Jiesheng Wu, Dhabaleswar K. Panda