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NIPS
2008
13 years 7 months ago
Scalable Algorithms for String Kernels with Inexact Matching
We present a new family of linear time algorithms based on sufficient statistics for string comparison with mismatches under the string kernels framework. Our algorithms improve t...
Pavel P. Kuksa, Pai-Hsi Huang, Vladimir Pavlovic
BMCBI
2006
166views more  BMCBI 2006»
13 years 5 months ago
Extraction of phylogenetic network modules from the metabolic network
Background: In bio-systems, genes, proteins and compounds are related to each other, thus forming complex networks. Although each organism has its individual network, some organis...
Takuji Yamada, Minoru Kanehisa, Susumu Goto
BMCBI
2005
100views more  BMCBI 2005»
13 years 5 months ago
EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments
Background: Structure-dependent substitution matrices increase the accuracy of sequence alignments when the 3D structure of one sequence is known, and are successful e.g. in fold ...
Jean-Christophe Gelly, Laurent Chiche, Jér&...
BMCBI
2008
145views more  BMCBI 2008»
13 years 5 months ago
Directed acyclic graph kernels for structural RNA analysis
Background: Recent discoveries of a large variety of important roles for non-coding RNAs (ncRNAs) have been reported by numerous researchers. In order to analyze ncRNAs by kernel ...
Kengo Sato, Toutai Mituyama, Kiyoshi Asai, Yasubum...
JSS
2008
217views more  JSS 2008»
13 years 5 months ago
MUSEMBLE: A novel music retrieval system with automatic voice query transcription and reformulation
So far, many researches have been done to develop efficient music retrieval systems, and query-by-humming has been considered as one of the most intuitive and effective query meth...
Seungmin Rho, Byeong-jun Han, Eenjun Hwang, Minkoo...