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BMCBI
2005
178views more  BMCBI 2005»
13 years 5 months ago
A quantization method based on threshold optimization for microarray short time series
Background: Reconstructing regulatory networks from gene expression profiles is a challenging problem of functional genomics. In microarray studies the number of samples is often ...
Barbara Di Camillo, Fatima Sanchez-Cabo, Gianna To...
ACIIDS
2010
IEEE
170views Database» more  ACIIDS 2010»
13 years 3 months ago
On the Effectiveness of Gene Selection for Microarray Classification Methods
Microarray data usually contains a high level of noisy gene data, the noisy gene data include incorrect, noise and irrelevant genes. Before Microarray data classification takes pla...
Zhongwei Zhang, Jiuyong Li, Hong Hu, Hong Zhou
BMCBI
2010
181views more  BMCBI 2010»
13 years 5 months ago
Intensity dependent estimation of noise in microarrays improves detection of differentially expressed genes
Background: In many microarray experiments, analysis is severely hindered by a major difficulty: the small number of samples for which expression data has been measured. When one ...
Amit Zeisel, Amnon Amir, Wolfgang J. Köstler,...
BMCBI
2008
104views more  BMCBI 2008»
13 years 5 months ago
Missing value imputation improves clustering and interpretation of gene expression microarray data
Background: Missing values frequently pose problems in gene expression microarray experiments as they can hinder downstream analysis of the datasets. While several missing value i...
Johannes Tuikkala, Laura Elo, Olli Nevalainen, Ter...
BMCBI
2007
144views more  BMCBI 2007»
13 years 5 months ago
Spectral estimation in unevenly sampled space of periodically expressed microarray time series data
Background: Periodogram analysis of time-series is widespread in biology. A new challenge for analyzing the microarray time series data is to identify genes that are periodically ...
Alan Wee-Chung Liew, Jun Xian, Shuanhu Wu, David K...