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GECCO
2007
Springer
196views Optimization» more  GECCO 2007»
13 years 11 months ago
Optimal nesting of species for exact cover of resources: two against many
The application of resource-defined fitness sharing (RFS) to shape nesting problems reveals a remarkable ability to discover tilings [7, 8]. These tilings represent exact covers...
Jeffrey Horn
BMCBI
2006
130views more  BMCBI 2006»
13 years 5 months ago
Docking protein domains in contact space
Background: Many biological processes involve the physical interaction between protein domains. Understanding these functional associations requires knowledge of the molecular str...
Stefano Lise, Alice Walker-Taylor, David T. Jones
PLDI
2003
ACM
13 years 10 months ago
Meta optimization: improving compiler heuristics with machine learning
Compiler writers have crafted many heuristics over the years to approximately solve NP-hard problems efficiently. Finding a heuristic that performs well on a broad range of applic...
Mark Stephenson, Saman P. Amarasinghe, Martin C. M...
CIKM
2008
Springer
13 years 7 months ago
Pairwise statistical significance of local sequence alignment using multiple parameter sets
Background: Accurate estimation of statistical significance of a pairwise alignment is an important problem in sequence comparison. Recently, a comparative study of pairwise stati...
Ankit Agrawal, Xiaoqiu Huang
GECCO
2010
Springer
191views Optimization» more  GECCO 2010»
13 years 10 months ago
Initialization parameter sweep in ATHENA: optimizing neural networks for detecting gene-gene interactions in the presence of sma
Recent advances in genotyping technology have led to the generation of an enormous quantity of genetic data. Traditional methods of statistical analysis have proved insufficient i...
Emily Rose Holzinger, Carrie C. Buchanan, Scott M....