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» Characterization Results for Time-Varying Codes
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CCS
2010
ACM
13 years 6 months ago
On the soundness of authenticate-then-encrypt: formalizing the malleability of symmetric encryption
A communication channel from an honest sender A to an honest receiver B can be described as a system with three interfaces labeled A, B, and E (the adversary), respectively, where...
Ueli Maurer, Björn Tackmann
BMCBI
2010
130views more  BMCBI 2010»
13 years 6 months ago
Amino acid "little Big Bang": Representing amino acid substitution matrices as dot products of Euclidian vectors
Background: Sequence comparisons make use of a one-letter representation for amino acids, the necessary quantitative information being supplied by the substitution matrices. This ...
Karel Zimmermann, Jean-François Gibrat
BMCBI
2007
113views more  BMCBI 2007»
13 years 6 months ago
PILER-CR: Fast and accurate identification of CRISPR repeats
Background: Sequencing of prokaryotic genomes has recently revealed the presence of CRISPR elements: short, highly conserved repeats separated by unique sequences of similar lengt...
Robert C. Edgar
BMCBI
2007
148views more  BMCBI 2007»
13 years 6 months ago
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
BMCBI
2005
117views more  BMCBI 2005»
13 years 6 months ago
HmtDB, a Human Mitochondrial Genomic Resource Based on Variability Studies Supporting Population Genetics and Biomedical Researc
Background: Population genetics studies based on the analysis of mtDNA and mitochondrial disease studies have produced a huge quantity of sequence data and related information. Th...
Marcella Attimonelli, Matteo Accetturo, Monica San...