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» Chemical bonding: From Lewis to atoms in molecules
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GECCO
2000
Springer
200views Optimization» more  GECCO 2000»
13 years 8 months ago
Chemical Crossover
During chemical reactions, molecules interact to produce new molecules. Some of the reaction mechanisms are very close to the way gene combine to produce new genes. Like the class...
Hugues Bersini
BMCBI
2008
85views more  BMCBI 2008»
13 years 5 months ago
Wanted: unique names for unique atom positions. PDB-wide analysis of diastereotopic atom names of small molecules containing dip
Background: Biological chemistry is very stereospecific. Nonetheless, the diastereotopic oxygen atoms of diphosphate-containing molecules in the Protein Data Bank (PDB) are often ...
Christopher A. Bottoms, Dong Xu
ICDM
2002
IEEE
91views Data Mining» more  ICDM 2002»
13 years 9 months ago
Mining Molecular Fragments: Finding Relevant Substructures of Molecules
We present an algorithm to find fragments in a set of molecules that help to discriminate between different classes of, for instance, activity in a drug discovery context. Instea...
Christian Borgelt, Michael R. Berthold
JCC
2008
88views more  JCC 2008»
13 years 4 months ago
A self-organizing algorithm for molecular alignment and pharmacophore development
Abstract: We present a method for simultaneous three-dimensional (3D) structure generation and pharmacophorebased alignment using a self-organizing algorithm called Stochastic Prox...
Deepak Bandyopadhyay, Dimitris K. Agrafiotis
CANDC
2002
ACM
13 years 4 months ago
A Tool for the Interactive 3D Visualization of Electronic Structure in Molecules and Solids
This paper presents the Vienna ab initio simulation package (VASP) data viewer, a desktop 3D visualization application for the analysis of valence electronic structure information...
Timothy B. Terriberry, David F. Cox, Doug A. Bowma...