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» Cis-regulatory module detection using constraint programming
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CSB
2005
IEEE
168views Bioinformatics» more  CSB 2005»
13 years 10 months ago
cis-Regulatory Element Prediction in Mammalian Genomes
The identification of cis-regulatory elements and modules is an important step in understanding the regulation of genes. We have developed a pipeline capable of running multiple m...
Asim S. Siddiqui, Gordon Robertson, Misha Bilenky,...
BIBM
2010
IEEE
161views Bioinformatics» more  BIBM 2010»
13 years 2 months ago
Cis-regulatory module detection using constraint programming
We propose a method for finding CRMs in a set of co-regulated genes. Each CRM consists of a set of binding sites of transcription factors. We wish to find CRMs involving the same t...
Tias Guns, Hong Sun, Kathleen Marchal, Siegfried N...
PC
2012
223views Management» more  PC 2012»
12 years 2 days ago
Using shared arrays in message-driven parallel programs
This paper describes a safe and efficient combination of the object-based message-driven execution and shared array parallel programming models. In particular, we demonstrate how ...
Phil Miller, Aaron Becker, Laxmikant V. Kalé...
INFORMS
2010
145views more  INFORMS 2010»
13 years 3 months ago
An Automated Intensity-Modulated Radiation Therapy Planning System
We design and implement an intensity-modulated radiation therapy (IMRT) plan generation technology that effectively and efficiently optimizes beam geometry as well as beam intens...
Shabbir Ahmed, Ozan Gozbasi, Martin W. P. Savelsbe...
SIPS
2007
IEEE
13 years 10 months ago
SVD-Aided, Iteratively Detected Spatial Division Multiplexing Using Long-Range Channel Prediction
In this contribution iteratively detected spatial division multiplexing is investigated under the constraint of a fixed data throughput. Existing bit loading and transmit power a...
Andreas Ahrens, Wei Liu, Soon Xin Ng, Volker K&uum...