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» Classifying protein sequences using hydropathy blocks
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BMCBI
2011
12 years 8 months ago
HomPPI: A Class of Sequence Homology Based Protein-Protein Interface Prediction Methods
Background: Although homology-based methods are among the most widely used methods for predicting the structure and function of proteins, the question as to whether interface sequ...
Li C. Xue, Drena Dobbs, Vasant Honavar
BMCBI
2008
97views more  BMCBI 2008»
13 years 4 months ago
Comparison study on k-word statistical measures for protein: From sequence to 'sequence space'
Background: Many proposed statistical measures can efficiently compare protein sequence to further infer protein structure, function and evolutionary information. They share the s...
Qi Dai, Tian-Ming Wang
BMCBI
2006
150views more  BMCBI 2006»
13 years 4 months ago
Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chains
Background: The subcellular location of a protein is closely related to its function. It would be worthwhile to develop a method to predict the subcellular location for a given pr...
Alla Bulashevska, Roland Eils
BMCBI
2008
88views more  BMCBI 2008»
13 years 4 months ago
Use of machine learning algorithms to classify binary protein sequences as highly-designable or poorly-designable
Background: By using a standard Support Vector Machine (SVM) with a Sequential Minimal Optimization (SMO) method of training, Na
Myron Peto, Andrzej Kloczkowski, Vasant Honavar, R...