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» Columba: an integrated database of proteins, structures, and...
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BMCBI
2005
106views more  BMCBI 2005»
13 years 5 months ago
ESTree db: a Tool for Peach Functional Genomics
Background: The ESTree db http://www.itb.cnr.it/estree/ represents a collection of Prunus persica expressed sequenced tags (ESTs) and is intended as a resource for peach functiona...
Barbara Lazzari, Andrea Caprera, Alberto Vecchiett...
BMCBI
2010
191views more  BMCBI 2010»
13 years 5 months ago
BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions
Background: Genome-scale metabolic reconstructions under the Constraint Based Reconstruction and Analysis (COBRA) framework are valuable tools for analyzing the metabolic capabili...
Jan Schellenberger, Junyoung O. Park, Tom M. Conra...
WIDM
2003
ACM
13 years 10 months ago
Datarover: a taxonomy based crawler for automated data extraction from data-intensive websites
The advent of e-commerce has created a trend that brought thousands of catalogs online. Most of these websites are “taxonomy-directed”. A Web site is said to be ``taxonomydire...
Hasan Davulcu, S. Koduri, Saravanakumar Nagarajan
BMCBI
2010
70views more  BMCBI 2010»
13 years 5 months ago
The Text-mining based PubChem Bioassay neighboring analysis
Background: In recent years, the number of High Throughput Screening (HTS) assays deposited in PubChem has grown quickly. As a result, the volume of both the structured informatio...
Lianyi Han, Tugba O. Suzek, Yanli Wang, Steve H. B...
BMCBI
2008
152views more  BMCBI 2008»
13 years 5 months ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...