57 search results - page 1 / 12 » Combinatorial Problems on Strings with Applications to Prote... |
LATIN
2004
Springer
13 years 10 months ago
2004
Springer
We consider the problem of protein folding in the HP model on the 3D square lattice. This problem is combinatorially equivalent to folding a string of 0’s and 1’s so that the s...
AI
2003
Springer
13 years 10 months ago
2003
Springer
The prediction of a protein’s structure from its amino-acid sequence is one of the most important problems in computational biology. In the current focus on a widely studied abst...
LPAR
2005
Springer
13 years 10 months ago
2005
Springer
Abstract. The paper describes the formalization and implementation of an efficient constraint programming framework operating on 3D crystal lattices. The framework is motivated an...
BMCBI
2005
13 years 4 months ago
2005
Background: The protein folding problem is a fundamental problems in computational molecular biology and biochemical physics. Various optimisation methods have been applied to for...
PPDP
2005
Springer
13 years 10 months ago
2005
Springer
The paper describes a constraint-based solution to the protein folding problem on face-centered cubic lattices—a biologically meaningful approximation of the general protein fol...