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QEST
2005
IEEE
13 years 10 months ago
Comparative Analysis of Bisimulation Relations on Alternating and Non-Alternating Probabilistic Models
We consider bisimulation and weak bisimulation relations in the context of the Labeled Markov Chains of Hansson and Jonsson, the Concurrent Labeled Markov Chains of Philippou, Lee...
Roberto Segala, Andrea Turrini
FOSSACS
2007
Springer
13 years 11 months ago
Logical Characterizations of Bisimulations for Discrete Probabilistic Systems
We give logical characterizations of bisimulation relations for the probabilistic automata of Segala in terms of three Hennessy-Milner style logics. The three logics characterize s...
Augusto Parma, Roberto Segala
BMCBI
2007
146views more  BMCBI 2007»
13 years 5 months ago
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
Background: Transcriptional modules (TM) consist of groups of co-regulated genes and transcription factors (TF) regulating their expression. Two high-throughput (HT) experimental ...
Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan,...
BMCBI
2004
133views more  BMCBI 2004»
13 years 4 months ago
Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
Background: RNA secondary structure prediction methods based on probabilistic modeling can be developed using stochastic context-free grammars (SCFGs). Such methods can readily co...
Robin D. Dowell, Sean R. Eddy