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» Comparing functional annotation analyses with Catmap
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BMCBI
2007
133views more  BMCBI 2007»
13 years 5 months ago
Semantic integration to identify overlapping functional modules in protein interaction networks
Background: The systematic analysis of protein-protein interactions can enable a better understanding of cellular organization, processes and functions. Functional modules can be ...
Young-Rae Cho, Woochang Hwang, Murali Ramanathan, ...
BIODATAMINING
2008
135views more  BIODATAMINING 2008»
13 years 5 months ago
Fast Gene Ontology based clustering for microarray experiments
Background: Analysis of a microarray experiment often results in a list of hundreds of diseaseassociated genes. In order to suggest common biological processes and functions for t...
Kristian Ovaska, Marko Laakso, Sampsa Hautaniemi
DOCENG
2003
ACM
13 years 10 months ago
Methods for the semantic analysis of document markup
We present an approach on how to investigate what kind of semantic information is regularly associated with the structural markup of scientific articles. This approach addresses ...
Petra Saskia Bayerl, Harald Lüngen, Daniela G...
BMCBI
2006
129views more  BMCBI 2006»
13 years 5 months ago
A literature-based similarity metric for biological processes
Background: Recent analyses in systems biology pursue the discovery of functional modules within the cell. Recognition of such modules requires the integrative analysis of genome-...
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, J...
BMCBI
2005
73views more  BMCBI 2005»
13 years 5 months ago
An analysis of extensible modelling for functional genomics data
Background: Several data formats have been developed for large scale biological experiments, using a variety of methodologies. Most data formats contain a mechanism for allowing e...
Andrew R. Jones, Norman W. Paton