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IPPS
2009
IEEE
14 years 12 days ago
Dynamic parallelization for RNA structure comparison
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Eric Snow, Eric Aubanel, Patricia Evans
COST
2009
Springer
133views Multimedia» more  COST 2009»
14 years 10 days ago
Handwritten Signature On-Card Matching Performance Testing
This paper presents equipment and procedures for on-card (in-situ) performance testing of biometric on-card comparison implementations using pre-existing databases of biometric sam...
Olaf Henniger, Sascha Müller
ISPDC
2007
IEEE
14 years 1 days ago
Whole Genome Comparison on a Network of Workstations
Whole genome comparison consists of comparing or aligning genome sequences with a goal of finding similarities between them. Previously we have shown how SIMD Extensions used in ...
Arpith C. Jacob, Sugata Sanyal, Marcin Paprzycki, ...
IPPS
1999
IEEE
13 years 10 months ago
Parallel Biological Sequence Comparison Using Prefix Computations
We present practical parallel algorithms using prefix computations for various problems that arise in pairwise comparison of biological sequences. We consider both constant and af...
Srinivas Aluru, Natsuhiko Futamura, Kishan Mehrotr...
IPPS
2008
IEEE
14 years 5 days ago
Ordered index seed algorithm for intensive DNA sequence comparison
This paper presents a seed-based algorithm for intensive DNA sequence comparison. The novelty comes from the way seeds are used to efficiently generate small ungapped alignments ...
Dominique Lavenier