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BMCBI
2008
142views more  BMCBI 2008»
13 years 6 months ago
Optimal neighborhood indexing for protein similarity search
Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
Pierre Peterlongo, Laurent Noé, Dominique L...
BMCBI
2010
121views more  BMCBI 2010»
13 years 6 months ago
Knowledge-based annotation of small molecule binding sites in proteins
Background: The study of protein-small molecule interactions is vital for understanding protein function and for practical applications in drug discovery. To benefit from the rapi...
Ratna R. Thangudu, Manoj Tyagi, Benjamin A. Shoema...
CORR
2012
Springer
179views Education» more  CORR 2012»
12 years 1 months ago
Distributional convergence for the number of symbol comparisons used by QuickSort
d Abstract) James Allen Fill1† 1 Department of Applied Mathematics and Statistics, The Johns Hopkins University, 34th and Charles Streets, Baltimore, MD 21218-2682 USA received 2...
James Allen Fill
MOBISYS
2006
ACM
14 years 5 months ago
Building realistic mobility models from coarse-grained traces
In this paper we present a trace-driven framework capable of building realistic mobility models for the simulation studies of mobile systems. With the goal of realism, this framew...
Jungkeun Yoon, Brian D. Noble, Mingyan Liu, Minkyo...
BMCBI
2007
113views more  BMCBI 2007»
13 years 5 months ago
Statistical power of phylo-HMM for evolutionarily conserved element detection
Background: An important goal of comparative genomics is the identification of functional elements through conservation analysis. Phylo-HMM was recently introduced to detect conse...
Xiaodan Fan, Jun Zhu, Eric E. Schadt, Jun S. Liu