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» Composing dataflow analyses and transformations
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BMCBI
2011
13 years 23 days ago
A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
Background: Bioinformatic analyses typically proceed as chains of data-processing tasks. A pipeline, or ‘workflow’, is a well-defined protocol, with a specific structure defin...
Marcin Cieslik, Cameron Mura
EMSOFT
2006
Springer
13 years 9 months ago
Polychronous mode automata
Among related synchronous programming principles, the model of computation of the Polychrony workbench stands out by its capability to give high-level description of systems where...
Jean-Pierre Talpin, Christian Brunette, Thierry Ga...
BMCBI
2005
128views more  BMCBI 2005»
13 years 5 months ago
Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process
Background: Biological Mass Spectrometry is used to analyse peptides and proteins. A mass spectrum generates a list of measured mass to charge ratios and intensities of ionised pe...
Witold E. Wolski, Maciej Lalowski, Peter Martus, R...
POPL
2008
ACM
14 years 6 months ago
Generating precise and concise procedure summaries
We present a framework for generating procedure summaries that are precise -- applying the summary in a given context yields the same result as re-analyzing the procedure in that ...
Greta Yorsh, Eran Yahav, Satish Chandra
ICDE
2010
IEEE
322views Database» more  ICDE 2010»
14 years 5 months ago
XML-Based Computation for Scientific Workflows
Scientific workflows are increasingly used for rapid integration of existing algorithms to form larger and more comgrams. Such workflows promise to provide more abstract, yet execu...
Bertram Ludäscher, Daniel Zinn, Shawn Bowers