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GCB
2009
Springer
139views Biometrics» more  GCB 2009»
13 years 9 months ago
Graph-Kernels for the Comparative Analysis of Protein Active Sites
Abstract: Graphs are often used to describe and analyze the geometry and physicochemical composition of biomolecular structures, such as chemical compounds and protein active sites...
Thomas Fober, Marco Mernberger, Ralph Moritz, Eyke...
AAAI
2012
11 years 7 months ago
Learning the Kernel Matrix with Low-Rank Multiplicative Shaping
Selecting the optimal kernel is an important and difficult challenge in applying kernel methods to pattern recognition. To address this challenge, multiple kernel learning (MKL) ...
Tomer Levinboim, Fei Sha
BMCBI
2004
113views more  BMCBI 2004»
13 years 4 months ago
Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites
Background: Kernel-based learning algorithms are among the most advanced machine learning methods and have been successfully applied to a variety of sequence classification tasks ...
Peter Meinicke, Maike Tech, Burkhard Morgenstern, ...
ACL
2006
13 years 6 months ago
A Composite Kernel to Extract Relations between Entities with Both Flat and Structured Features
This paper proposes a novel composite kernel for relation extraction. The composite kernel consists of two individual kernels: an entity kernel that allows for entity-related feat...
Min Zhang, Jie Zhang, Jian Su, Guodong Zhou
ICML
2006
IEEE
14 years 5 months ago
Learning low-rank kernel matrices
Kernel learning plays an important role in many machine learning tasks. However, algorithms for learning a kernel matrix often scale poorly, with running times that are cubic in t...
Brian Kulis, Inderjit S. Dhillon, Máty&aacu...