The problem of storing a set of strings – a string dictionary – in compact form appears naturally in many cases. While classically it has represented a small part of the whole ...
Abstract. Compressed pattern matching is one of the most active topics in string matching. The goal is to find all occurrences of a pattern in a compressed text without decompress...
The increasing throughput of sequencing raises growing needs for methods of sequence analysis and comparison on a genomic scale, notably, in connection with phylogenetic tree reco...
Similarity search and similarity join on strings are important for applications such as duplicate detection, error detection, data cleansing, or comparison of biological sequences....
We present a new bit-parallel technique for approximate string matching. We build on two previous techniques. The first one, BPM [Myers, J. of the ACM, 1999], searches for a patte...