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CORR
2011
Springer
181views Education» more  CORR 2011»
12 years 12 months ago
Compressed String Dictionaries
The problem of storing a set of strings – a string dictionary – in compact form appears naturally in many cases. While classically it has represented a small part of the whole ...
Nieves R. Brisaboa, Rodrigo Cánovas, Miguel...
CPM
2001
Springer
111views Combinatorics» more  CPM 2001»
13 years 9 months ago
Multiple Pattern Matching Algorithms on Collage System
Abstract. Compressed pattern matching is one of the most active topics in string matching. The goal is to find all occurrences of a pattern in a compressed text without decompress...
Takuya Kida, Tetsuya Matsumoto, Masayuki Takeda, A...
ALMOB
2008
131views more  ALMOB 2008»
13 years 5 months ago
Fast algorithms for computing sequence distances by exhaustive substring composition
The increasing throughput of sequencing raises growing needs for methods of sequence analysis and comparison on a genomic scale, notably, in connection with phylogenetic tree reco...
Alberto Apostolico, Olgert Denas
SSDBM
2010
IEEE
220views Database» more  SSDBM 2010»
13 years 9 months ago
Prefix Tree Indexing for Similarity Search and Similarity Joins on Genomic Data
Similarity search and similarity join on strings are important for applications such as duplicate detection, error detection, data cleansing, or comparison of biological sequences....
Astrid Rheinländer, Martin Knobloch, Nicky Ho...
ALGORITHMICA
2005
195views more  ALGORITHMICA 2005»
13 years 4 months ago
Bit-Parallel Witnesses and Their Applications to Approximate String Matching
We present a new bit-parallel technique for approximate string matching. We build on two previous techniques. The first one, BPM [Myers, J. of the ACM, 1999], searches for a patte...
Heikki Hyyrö, Gonzalo Navarro