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CMSB
2007
Springer
13 years 10 months ago
Reconstructing Metabolic Pathways by Bidirectional Chemical Search
Abstract. One of the main challenges in systems biology is the establishment of the metabolome: a catalogue of the metabolites and biochemical reactions present in a specific orga...
Liliana Félix, Francesc Rosselló, Ga...
BIOINFORMATICS
2007
61views more  BIOINFORMATICS 2007»
13 years 4 months ago
Computational methods for diffusion-influenced biochemical reactions
Maciej Dobrzynski, Jordi Vidal Rodríguez, J...
CDC
2010
IEEE
141views Control Systems» more  CDC 2010»
12 years 11 months ago
Hybrid moment computation algorithm for biochemical reaction networks
Moment computation is essential to the analysis of stochastic kinetic models of biochemical reaction networks. It is often the case that the moment evolution, usually the first and...
Yun-Bo Zhao, Jongrae Kim, João Pedro Hespan...
CDC
2009
IEEE
133views Control Systems» more  CDC 2009»
13 years 9 months ago
Kinetic perturbations as robustness analysis tool for biochemical reaction networks
— Models of biochemical reaction networks can be decomposed into a stoichiometric part and a kinetic part. The stoichiometric part describes the structural mass flows while the ...
Steffen Waldherr, Frank Allgöwer, Elling W. J...
BMCBI
2005
156views more  BMCBI 2005»
13 years 4 months ago
A new dynamical layout algorithm for complex biochemical reaction networks
Background: To study complex biochemical reaction networks in living cells researchers more and more rely on databases and computational methods. In order to facilitate computatio...
Katja Wegner, Ursula Kummer