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» Computing exact P-values for DNA motifs
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CPM
2007
Springer
222views Combinatorics» more  CPM 2007»
13 years 10 months ago
Computing Exact p-Value for Structured Motif
Extracting motifs from a set of DNA sequences is important in computational biology. Occurrence probability is a common used statistics to evaluate the statistical significance of...
Jing Zhang, Xi Chen, Ming Li
BIOINFORMATICS
2007
63views more  BIOINFORMATICS 2007»
13 years 4 months ago
Computing exact P-values for DNA motifs
Jing Zhang, Bo Jiang, Ming Li, John Tromp, Xuegong...
BIRD
2008
Springer
177views Bioinformatics» more  BIRD 2008»
13 years 6 months ago
Fast Structured Motif Search in DNA Sequences
We study the problem of structured motif search in DNA sequences. This is a fundamental task in bioinformatics which contributes to better understanding of genome characteristics a...
Mihail Halachev, Nematollaah Shiri
BMCBI
2006
145views more  BMCBI 2006»
13 years 4 months ago
Fast-Find: A novel computational approach to analyzing combinatorial motifs
Background: Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined seq...
Micah Hamady, Erin Peden, Rob Knight, Ravinder Sin...
BMCBI
2002
120views more  BMCBI 2002»
13 years 4 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam