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CDB
2004
Springer
172views Database» more  CDB 2004»
13 years 10 months ago
Constraint Database Solutions to the Genome Map Assembly Problem
Abstract. Long DNA sequences have to be cut using restriction enzymes into small fragments whose lengths and/or nucleotide sequences can be analyzed by currently available technolo...
Viswanathan Ramanathan, Peter Z. Revesz
CORR
2010
Springer
144views Education» more  CORR 2010»
13 years 4 months ago
CLP-based protein fragment assembly
Abstract. The paper investigates a novel approach, based on Constraint Logic Programming (CLP), to predict the 3D conformation of a protein via fragments assembly. The fragments ar...
Alessandro Dal Palù, Agostino Dovier, Feder...
CIKM
1994
Springer
13 years 8 months ago
Facilitating Transformations in a Human Genome Project Database
Human Genome Project databases present a confluence of interesting database challenges: rapid schema and data evolution, complex data entry and constraint management, and the need...
Susan B. Davidson, Anthony Kosky, Barbara A. Eckma...
BMCBI
2010
183views more  BMCBI 2010»
13 years 4 months ago
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Background: High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing application...
Adel Dayarian, Todd P. Michael, Anirvan M. Sengupt...
SIGMOD
2004
ACM
163views Database» more  SIGMOD 2004»
14 years 4 months ago
Constraint-Based XML Query Rewriting For Data Integration
We study the problem of answering queries through a target schema, given a set of mappings between one or more source schemas and this target schema, and given that the data is at...
Cong Yu, Lucian Popa