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» Contextual Random Boolean Networks
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GECCO
2004
Springer
132views Optimization» more  GECCO 2004»
13 years 11 months ago
Optimizing Topology and Parameters of Gene Regulatory Network Models from Time-Series Experiments
Abstract. In this paper we address the problem of finding gene regulatory networks from experimental DNA microarray data. Different approaches to infer the dependencies of gene r...
Christian Spieth, Felix Streichert, Nora Speer, An...
JCB
2006
114views more  JCB 2006»
13 years 6 months ago
A General Modeling Strategy for Gene Regulatory Networks with Stochastic Dynamics
A stochastic genetic toggle switch model that consists of two identical, mutually repressive genes is built using the Gillespie algorithm with time delays as an example of a simpl...
Andre Ribeiro, Rui Zhu, Stuart A. Kauffman
AI
2008
Springer
13 years 6 months ago
Modelling and solving temporal reasoning as propositional satisfiability
Representing and reasoning about time dependent information is a key research issue in many areas of computer science and artificial intelligence. One of the best known and widely...
Duc Nghia Pham, John Thornton, Abdul Sattar
BMCBI
2008
201views more  BMCBI 2008»
13 years 6 months ago
A copula method for modeling directional dependence of genes
Background: Genes interact with each other as basic building blocks of life, forming a complicated network. The relationship between groups of genes with different functions can b...
Jong-Min Kim, Yoon-Sung Jung, Engin A. Sungur, Kap...
PERVASIVE
2009
Springer
14 years 24 days ago
Methodologies for Continuous Cellular Tower Data Analysis
This paper presents novel methodologies for the analysis of continuous cellular tower data from 215 randomly sampled subjects in a major urban city. We demonstrate the potential of...
Nathan Eagle, John A. Quinn, Aaron Clauset