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CPM
2009
Springer
128views Combinatorics» more  CPM 2009»
13 years 8 months ago
Contracted Suffix Trees: A Simple and Dynamic Text Indexing Data Structure
Andrzej Ehrenfeucht, Ross M. McConnell, Sung-Whan ...
VLDB
2002
ACM
184views Database» more  VLDB 2002»
14 years 5 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
IJFCS
2008
110views more  IJFCS 2008»
13 years 4 months ago
Indexing Gapped-Factors Using a Tree
We present a data structure to index a specific kind of factors, that is of substrings, called gapped-factors. A gapped-factor is a factor containing a gap that is ignored during ...
Pierre Peterlongo, Julien Allali, Marie-France Sag...
JEA
2008
120views more  JEA 2008»
13 years 4 months ago
Better external memory suffix array construction
Suffix arrays are a simple and powerful data structure for text processing that can be used for full text indexes, data compression, and many other applications in particular in b...
Roman Dementiev, Juha Kärkkäinen, Jens M...
CPM
2007
Springer
134views Combinatorics» more  CPM 2007»
13 years 8 months ago
Efficient Computation of Substring Equivalence Classes with Suffix Arrays
This paper considers enumeration of substring equivalence classes introduced by Blumer et al. [1]. They used the equivalence classes to define an index structure called compact dir...
Kazuyuki Narisawa, Shunsuke Inenaga, Hideo Bannai,...