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BMCBI
2005
292views more  BMCBI 2005»
13 years 5 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
SIGSOFT
2000
ACM
13 years 9 months ago
Implicit context: easing software evolution and reuse
Software systems should consist of simple, conceptually clean software components interacting along narrow, well-defined paths. All too often, this is not reality: complex compon...
Robert J. Walker, Gail C. Murphy
BMCBI
2004
110views more  BMCBI 2004»
13 years 5 months ago
Tools for loading MEDLINE into a local relational database
Background: Researchers who use MEDLINE for text mining, information extraction, or natural language processing may benefit from having a copy of MEDLINE that they can manage loca...
Diane E. Oliver, Gaurav Bhalotia, Ariel S. Schwart...
AGTIVE
2003
Springer
13 years 10 months ago
Integrating Graph Rewriting and Standard Software Tools
OptimixJ is a graph rewrite tool that can be embedded easily into the standard software process. Applications and models can be developed in Java or UML and extended by graph rewri...
Uwe Aßmann, Johan Lövdahl
BMCBI
2008
111views more  BMCBI 2008»
13 years 5 months ago
A perl package and an alignment tool for phylogenetic networks
Background: Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of evolutionary events acting at the population level, like recombin...
Gabriel Cardona, Francesc Rosselló, Gabriel...