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AHS
2007
IEEE
245views Hardware» more  AHS 2007»
13 years 11 months ago
DNA and Protein Sequence Alignment with High Performance Reconfigurable Systems
Mohamed Abouellail, Esam El-Araby, Mohamed Taher
BMCBI
2010
198views more  BMCBI 2010»
13 years 4 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
ARC
2007
Springer
123views Hardware» more  ARC 2007»
13 years 8 months ago
Multiple Sequence Alignment Using Reconfigurable Computing
The alignment of multiple protein (or DNA) sequences is a current problem in Bioinformatics. ClustalW is the most popular heuristic algorithm for multiple sequence alignment. Pairw...
Carlos R. Erig Lima, Heitor S. Lopes, Maiko R. Mor...
CCECE
2006
IEEE
13 years 10 months ago
Survey of Biological High Performance Computing: Algorithms, Implementations and Outlook Research
During recent years there has been an explosive growth of biological data coming from genome projects, proteomics, protein structure determination, and the rapid expansion in digi...
Nasreddine Hireche, J. M. Pierre Langlois, Gabriel...
BMCBI
2006
137views more  BMCBI 2006»
13 years 4 months ago
Sigma: multiple alignment of weakly-conserved non-coding DNA sequence
Background: Existing tools for multiple-sequence alignment focus on aligning protein sequence or protein-coding DNA sequence, and are often based on extensions to Needleman-Wunsch...
Rahul Siddharthan