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NAR
2008
115views more  NAR 2008»
13 years 4 months ago
Data growth and its impact on the SCOP database: new developments
The Structural Classification of Proteins (SCOP) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationsh...
Antonina Andreeva, Dave Howorth, John-Marc Chandon...
BMCBI
2008
111views more  BMCBI 2008»
13 years 4 months ago
SciDBMaker: new software for computer-aided design of specialized biological databases
Background: The exponential growth of research in molecular biology has brought concomitant proliferation of databases for stocking its findings. A variety of protein sequence dat...
Riadh Hammami, Abdelmajid Zouhir, Karim Naghmouchi...
BMCBI
2010
205views more  BMCBI 2010»
13 years 4 months ago
A fast indexing approach for protein structure comparison
Background: Protein structure comparison is a fundamental task in structural biology. While the number of known protein structures has grown rapidly over the last decade, searchin...
Lei Zhang, James Bailey, Arun Siddharth Konagurthu...
IPPS
2008
IEEE
13 years 11 months ago
Supporting high performance bioinformatics flat-file data processing using indices
As an essential part of in vitro analysis, biological database query has become more and more important in the research process. A few challenges that are specific to bioinformat...
Xuan Zhang, Gagan Agrawal
SIGMOD
2008
ACM
145views Database» more  SIGMOD 2008»
14 years 4 months ago
The Claremont report on database research
In late May, 2008, a group of database researchers, architects, users and pundits met at the Claremont Resort in Berkeley, California to discuss the state of the research field an...
Rakesh Agrawal, Anastasia Ailamaki, Philip A. Bern...