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» Data parallelism in bioinformatics workflows using Hydra
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HPDC
2010
IEEE
13 years 5 months ago
Data parallelism in bioinformatics workflows using Hydra
Large scale bioinformatics experiments are usually composed by a set of data flows generated by a chain of activities (programs or services) that may be modeled as scientific work...
Fábio Coutinho, Eduardo S. Ogasawara, Danie...
VLDB
2005
ACM
184views Database» more  VLDB 2005»
14 years 4 months ago
Rule-based workflow management for bioinformatics
We describe a data-centric software architecture for bioinformatics workflows and a rule-based workflow enactment system that uses declarative specifications of data dependences be...
John S. Conery, Julian Catchen, Michael Lynch
GCC
2006
Springer
13 years 8 months ago
GPFlow: An Intuitive Environment for Web Based Scientific Workflow
Increasingly scientists are using collections of software tools in their research. These tools are typically used in concert, often necessitating laborious and error prone manual ...
Asbjørn Rygg, Paul Roe, On Wong
BMCBI
2007
187views more  BMCBI 2007»
13 years 4 months ago
BioWMS: a web-based Workflow Management System for bioinformatics
Background: An in-silico experiment can be naturally specified as a workflow of activities implementing, in a standardized environment, the process of data and control analysis. A...
Ezio Bartocci, Flavio Corradini, Emanuela Merelli,...
ESCIENCE
2005
IEEE
13 years 10 months ago
Bio-Workflows with BizTalk: Using a Commercial Workflow Engine for eScience
Workflow is an important enabling technology for eScience. Research into workflow systems for eScience has yielded several specialized workflow engines. In this paper we investiga...
Asbjørn Rygg, Scott Mann, Paul Roe, On Wong