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» Data parallelism in bioinformatics workflows using Hydra
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CCGRID
2005
IEEE
13 years 7 months ago
A semantic grid-based data access and integration service for bioinformatics
Given the heterogeneous nature of biological data and their intensive use in many tools, in this paper we propose a semantic data access and integration (DAI) service, based on th...
Giovanni Aloisio, Massimo Cafaro, Italo Epicoco, S...
BMCBI
2007
177views more  BMCBI 2007»
13 years 5 months ago
Biowep: a workflow enactment portal for bioinformatics applications
Background: The huge amount of biological information, its distribution over the Internet and the heterogeneity of available software tools makes the adoption of new data integrat...
Paolo Romano 0001, Ezio Bartocci, Guglielmo Bertol...
ICS
1999
Tsinghua U.
13 years 9 months ago
Improving the performance of speculatively parallel applications on the Hydra CMP
Hydra is a chip multiprocessor (CMP) with integrated support for thread-level speculation. Thread-level speculation provides a way to parallelize sequential programs without the n...
Kunle Olukotun, Lance Hammond, Mark Willey
BMCBI
2011
12 years 12 months ago
A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
Background: Bioinformatic analyses typically proceed as chains of data-processing tasks. A pipeline, or ‘workflow’, is a well-defined protocol, with a specific structure defin...
Marcin Cieslik, Cameron Mura
PROCEDIA
2010
138views more  PROCEDIA 2010»
12 years 11 months ago
Using the reconfigurable massively parallel architecture COPACOBANA 5000 for applications in bioinformatics
Currently several computational problems require high processing power to handle huge amounts of data, although underlying core algorithms appear to be rather simple. Especially i...
Lars Wienbrandt, Stefan Baumgart, Jost Bissel, Car...