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» Data parallelism in bioinformatics workflows using Hydra

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BMCBI
2006

157views more BMCBI 2006»

Determination of the minimum number of microarray experiments for discovery of gene expression patterns

13 years 5 months ago

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Background: One type of DNA microarray experiment is discovery of gene expression patterns for a cell line undergoing a biological process over a series of time points. Two import...

Fang-Xiang Wu, W. J. Zhang, Anthony J. Kusalik

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SASP
2009
IEEE

291views Hardware» more SASP 2009»

A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs

13 years 11 months ago

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—This paper describes a multi-threaded parallel design and implementation of the Smith-Waterman (SM) algorithm on compute unified device architecture (CUDA)-compatible graphic pr...

Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada

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BCS
2008

176views Computer Science» more BCS 2008»

A Customisable Multiprocessor for Application-Optimised Inductive Logic Programming

13 years 6 months ago

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This paper describes a customisable processor designed to accelerate execution of inductive logic programming, targeting advanced field-programmable gate array (FPGA) technology. ...

Andreas Fidjeland, Wayne Luk, Stephen Muggleton

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